cQC - cDNA Quality Control   

A tool for resolving putative sequencing errors in single-pass cDNA, based on genomic sequence

Application Publication Cleaned Sequences
Source code for cQC.
Documentation
Please give us your feedback.
 Link to the manuscript (as seen in Bioinformatics)
Link to the supplementary text
Link to the supplementary tables
Link to the supplementary figures

 Rice
  NIAS/FAIS/RIKEN consortium
Arabidopsis
  RIKEN
  Genoscope

Web-based cQC (basic form)

Click here for Advanced Submission Form (more parameters)

1
Choose local file containing plain text, FASTA formatted cDNA sequences (no more than 1000 sequences, please):
2
 Genome:
3 Enter e-mail address :
(since processing may take a while, we will e-mail you the results)
4 MegaBlast E-value cutoff for locating genomic sequence that is similar to a given cDNA sequence:  
5 Percent ID cut-off:
  
6
Note: Depending on number of submitted sequences and server load, this may take anywhere from a few seconds to a few hours.

 
cQC website is hosted by the Biotechnology Computing Facility (BCF)
http://bcf.arl.arizona.edu